Highlights

In brief

Soybean fermentation with novel microbes such as Rhizopus oryzae, Neurospora crassa and Penicillium sp. can contribute to umami depth, boost aroma complexity and improve overall sensory appeal of resulting food products.

Photo by Kamala Bright | Unsplash

Soy gets a tasteful makeover

10 Sep 2025

Researchers find that the same microbes behind cheeses and dry-aged meats can add new depths of flavour to fermented soybean products.

Stinky tofu might smell like it belongs in a back alley, but to fans, its funk is pure flavour gold. Love it or hate it, its intense aroma and taste highlight how microbial fermentation can sculpt unique sensory experiences. Still, what if the same process behind stinky tofu could be tuned to create soy-based products that smell cleaner, taste richer and still deliver the same umami goodness with wider appeal?

To turn bland into bold and funky into refined, researchers at the A*STAR Singapore Institute of Food and Biotechnology Innovation (A*STAR SIFBI) have uncovered how some novel microbial strains can transform the aroma and taste of fermented soybean products.

“We want to create new sensory experiences that make these plant-based foods a flavourful, everyday choice for people, regardless of their dietary preferences,” said Yvonne Chow, an A*STAR SIFBI Principal Scientist and study leader.

The team—which included A*STAR SIFBI Senior Research Officer Xin Hui Chin, former Research Fellow Hosam Elhalis and Senior Scientist Aaron Thong—worked with Shao Quan Liu from the National University of Singapore to examine several bacterial and fungal strains not typically associated with soybeans, but well-known for producing savoury and umami notes in meats and cheeses.

“The idea was to adapt flavour chemistry from traditionally-fermented animal products to plants, using microbial strains already recognised as safe for human consumption,” said Chin.

The team found that a carefully-controlled environment was needed as some of the most promising flavour-producing candidates required highly specific conditions, while naturally-present Bacillusmicrobes could disrupt fermentation and their desired flavour outcomes.

Through aroma analysis conducted via an A*STAR SIFBI analytical platform, the team also found that under the right conditions, certain strains significantly enhanced the soy base’s depth of flavour. For example, Rhizopus oryzae drove an eight-fold increase in free amino acids, correlating with a marked boost in umami intensity.

“The strain that stood out most to us, both scientifically and sensorially, was Neurospora crassa,” said Chin, highlighting a mould used in the traditional production of oncom: a fermented peanut or soy waste staple of Javanese cuisine. “We found that its ability to produce methionine—a sulphur-containing amino acid linked to ’meaty’ and ’broth-like’ notes—added a depth and umami complexity often missing in plant-based products.”

Chin added that text here Penicillium mould species such as P. nalgiovense and P. camemberti—familiar from cured meats and cheeses—also adapted surprisingly well to a plant-based matrix, forming blooms typically seen on animal-based products. These strains generated high lipase activity levels which added to more complex aromas and enhanced mouthfeel.

Encouraged by these outcomes, the team have since experimented with co-cultures and uncovered new flavour combinations that led to a recent patent. They are also pursuing advances in bioprocess engineering and environmental control to scale up their promising discoveries to a full production line, aiming to tackle consistency issues in microbial performance.

“Ultimately, our work shows that plant-based substrates, when paired with the right microorganisms, can become a rich canvas for flavour innovation,” Chin said.

The A*STAR-affiliated researchers contributing to this research are from the A*STAR Singapore Institute of Food and Biotechnology Innovation (A*STAR SIFBI).

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References

Chin, X.H., Soh, R., Chan, G., Ng, P., Thong, A. et al. Modulating the aroma and taste profile of soybean using novel strains for fermentation. Current Research in Food Science 10, 100933 (2025). | article

About the Researchers

Xin Hui Chin is a Research Scientist at the A*STAR Singapore Institute of Food and Biotechnology Innovation (A*STAR SIFBI). Her work focuses on microbial biotechnology and sustainable food solutions, with a strong interest in fermentation science and metabolic engineering. Driven by the goal of advancing innovative and eco-friendly food systems, Chin contributes to multidisciplinary projects that bridge science and industry. She is currently doing a PhD degree in Food Science and Technology and is passionate about translating research into real-world impact.
Yvonne Chow is a Principal Scientist at the A*STAR Singapore Institute of Food and Biotechnology Innovation (A*STAR SIFBI), with over 20 years of experience in microbial fermentation and bioprocess engineering. Her work spans the design and optimisation of sustainable fermentation processes for producing food ingredients, bioactive compounds, fermented foods and alternative proteins. Chow has been instrumental in establishing key R&D capabilities in microbial bioprocess development and food biotechnology, including the pilot-scale fermentation laboratory at the Food Technology Innovation Centre, in support of A*STAR’s mission to advance industrial-scale bioproduction. Her research expertise includes microbial consortia fermentation, precision fermentation, biotransformation and valorisation, bioprocess modelling and control, and bioreactor design. A strong advocate for sustainable and nutritious food innovation, Chow is especially focused on soybean fermentation to develop new clean-label, flavourful and functional ingredients that can contribute to better health and food security. Her team collaborates actively with industry partners to deliver fermentation solutions and accelerate product commercialisation.
Hosam Elhalis was formerly a Research Fellow at the A*STAR Singapore Institute of Food and Biotechnology Innovation (A*STAR SIFBI) focusing on sustainable food innovation. He is currently a Senior Research Scientist at AB Mauri Limited, leading research in fermentation technologies and microbial optimisation. He holds a PhD degree in Food Science and Technology from the University of New South Wales (UNSW) Sydney, Australia, where his work advanced understanding of yeast in coffee fermentation. He is also an Adjunct Lecturer at UNSW, teaching microbiology and food science. Elhalis has held leadership roles in industry, including at Mérieux NutriSciences, and has published widely on topics such as coffee fermentation, plant-based foods, microbial cultures, multi-omics and food biotechnology. His work bridges scientific research and industry application, supporting a more sustainable food future.

This article was made for A*STAR Research by Wildtype Media Group